rs49326552 SNP Detail

Summary

• ID
  rs49326552
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:74828711 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGCCTGT GCCACTTGCT
  GAGGAAATCC AACGTAAGGC CTGGCTGGGC GTCACTGGTG GTCCATGTGG CAATGTAGCA
  AACCCACTAA GCTCCTACCA GCACTGCAGG ATATGTAGGT CCTGAGAACG GCAACCCCCG
  CCCAGGTCTC CTTCTTGCTC TGAAGAGTCT AGCGATGATC TGGTTAAGAA GAGTAAGTCC
  W
  AGGTGCCAAG ACCTGACCTT GGGCTTGGTG GATAGGCTGT AGGGCCATTG TTGAGGTTCT
  TTGAGTCCCT TATCCTATGC TTAAAACCAG TGTGTTGGAA GGGGTGTTAG GGGCATGAAA
  TAGGACATAG GCAACCTGAA GGAGACCTAG GTCCAGTGGT TAGCTAGGAG ATCTTGAGAG
  GGGGCTGCTG AAGAAACAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52365620	NES15274959	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49326552					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52365620	NES15274959	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:74828711 () rs orientation: forward

Symbol	Name	Function Class
Gnaz	guanine nucleotide binding protein, alpha z subunit	within coordinates
Rr216253	regulatory region 216253	111 bp distal
Rr224993	regulatory region 224993	1510 bp distal
Rsph14	radial spoke head homolog 14 (Chlamydomonas)	within coordinates