rs49326554 SNP Detail

Summary

• ID
  rs49326554
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90396739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCGGGACTA CATACTGAGA
  TCTTGTCTCA AGATTAACAA AACCCAAAAG GTAGAGGCTC TTTCTTGGAT GGACAAGCTG
  TGATGGAGGT TCTTTAGGAA ATAGTCCTGC CGTACGCATG TTTCTTGAGG CGGCTACATG
  AATGAGTACA TAGTGCAAAA AAAATCAAAG GTCTACAGAG ACTTTCCTGG AATCTTCTCG
  K
  GTCTACCAGA CAAAGCCGTT GGAGAATTGT ACTTGTATAC TCAGGTCACG GGCCCGTGCT
  TATTTGCTTG GAGAACCAGG AGGGTAAACT CCTGAATCCA GCATAGCTCT CCTGCGAGCT
  GTTTCCTTGG CCACGCTGTG GTTTAACCGC CTTAGTCGTT CCTGTAAGAC AGGAAGATGG
  GGAATCTAAT GACTGCTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60424448	NES15924384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49326554					SNP	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424448	NES15924384	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90396739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	1320 bp proximal
Ilf2	interleukin enhancer binding factor 2	1053 bp downstream
Rr397812	regulatory region 397812	1566 bp upstream
Rr580375	regulatory region 580375	1591 bp proximal
Rr580376	regulatory region 580376	1606 bp proximal
Rr580377	regulatory region 580377	1718 bp proximal
Snapin	SNAP-associated protein	mRNA-UTR
Tssr944	transcription start site region 944	1495 bp downstream
Tssr34231	transcription start site region 34231	275 bp upstream
Tssr34232	transcription start site region 34232	1285 bp downstream
Tssr34233	transcription start site region 34233	1350 bp downstream
Tssr34234	transcription start site region 34234	1543 bp downstream