rs49326555 SNP Detail

Summary

• ID
  rs49326555
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8688942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGGGCT ATACAGAGAA
  ACCCTGCCTC AAGAAAAAAC AAAAACAAAA AACAAACACA CACACACACA CACACACACA
  CACACTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTTTCT CACAAAAAGG GGAGCATTGC
  AGTGACAACC TTTCGCCACC AGGTGGCAGG CCAGAGCATC TGTCTCAGGG TTAAGCCCAG
  R
  GACACCAAGT ATGGGGAAAA CCAACATTAT GGACTGGTGA GATGGCTCAG TGGTTAAGAG
  CACTGACTGC TCTTCTGAAG TCCTGAGTTC AAATCCCAGC AACCACATGG TGGCTCACAA
  CCATCCATAA AGAGATCTGA CACCCCTCTT CTGGTGCATC TGAAGACAGC TAGAGTGTAG
  TTAGATATAA TAATAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61347597	NES16963405	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49326555					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61347597	NES16963405	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8688942 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4397	CpG island 4397	1802 bp proximal
Gm56531	predicted gene, 56531	within coordinates
Rr369494	regulatory region 369494	1698 bp upstream
Rr403226	regulatory region 403226	within coordinates
Tssr112727	transcription start site region 112727	1639 bp downstream
Tssr115717	transcription start site region 115717	1903 bp upstream
Tssr115718	transcription start site region 115718	1728 bp downstream