rs49327614 SNP Detail

Summary

• ID
  rs49327614
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170786174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGTTTCAGG GGAACAAATC TAAGCCACAG CATCAAGAAC
  GTCAAATAAC ACCGGGTAGC TCAGTGGTAG AGCACTTGGC CAGCATGCAA GAATATCAAA
  W
  AACCCAGAAA CTATGAGAGG CAAGTTTTAT TTATTAATTC ATTTAACAAT CTATTGCATT
  GTTCTGGTCT CTGGACTATG TTAGTGAAAA ATGAAAACAC                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60345298	NES15845165	PERLEGEN	MM_PANEL2	f	SNP	A	T	A	A	T	T	A	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49327614					SNP	A	T	A	A	T	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60345298	NES15845165	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170786174 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	12 bp downstream
Gm70986	predicted gene, 70986	289 bp upstream
Rr20517	regulatory region 20517	227 bp proximal
Rr20518	regulatory region 20518	827 bp proximal
Rr20519	regulatory region 20519	1226 bp proximal
Tssr284	transcription start site region 284	1289 bp downstream
Tssr14949	transcription start site region 14949	290 bp downstream
Tssr14950	transcription start site region 14950	1134 bp downstream
Tssr14951	transcription start site region 14951	1212 bp downstream
Tssr14952	transcription start site region 14952	1469 bp downstream
Tssr14953	transcription start site region 14953	1484 bp downstream