rs49328269 SNP Detail

Summary

• ID
  rs49328269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60958956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCTCAA ACAACACAAT
  TATGTTCTTA GAAGAAACTA GAACCGAAAA ATATGTACCC TACATTCTGA GACATCTGTG
  AATCTTTATA GTAACGAATA CCTAAGGAGT TTCTACCCAA ACTATAAATG AAAGGAAAAG
  AAAAAAATCC ACAAAACCAT AAATAGTAAG TTTCCCAAAA GTCCTAAAAG AATTTCACAG
  Y
  TAATAAATCA GGGTCTATTT CCCATCTCAA TAGATTTTTA AAAGCCACAA CCAAACCAAA
  AGAAATGCTT CCAACCCACC AGCCATGAAT GAGATTCCAG TCTACCTTTA CAGAAGGGGT
  AGTATACTTA CTCTCTGGCT GGAAGATAAG CTCATACACC CAGACTATCA GCAGAGTACA
  CAGGACACTC CACGCAATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52343513	NES15282556	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	T		T
ss323327698	CHEV_10_60585925	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49328269					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52343513	NES15282556	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60958956 () rs orientation: forward

Symbol	Name	Function Class
Gm55864	predicted gene, 55864	1960 bp downstream
Rr228136	regulatory region 228136	756 bp distal
Rr401931	regulatory region 401931	1042 bp downstream
Sgpl1	sphingosine phosphate lyase 1	within coordinates