rs49328777 SNP Detail

Summary

• ID
  rs49328777
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99142488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGTTAC CTATGGAGCC
  TAGCTTGGTG TCTGGGGGTG TGGAGGAAGG GTGGCTGCTG AGTCTCTGTT TTGCTGTTCA
  TTTTTGAGTT GATGGTGATT GGGTAGGCTC TGGCAGCTGT GGTTCCTCTG GGGGTTGACG
  AGCAGTGATG GTCGGGAGAC TGGAGGCTAG GTGTGGCTGC TTAGACATCT CCCTGGCTTA
  Y
  GGTTATAGAT CAAAATGGTT GGTCAGTCAA TAGCAGAAAC ACATCAAACA TCACAGAGCT
  TGGGAGCATT GAGTGACTGC ACAGTGTGTT CACAAATGCC TTCTTTGCCT GTTCTTGGAC
  TTTGAGGATG GCACCTTCAG AAGCAAGCAA AGAGACTTCT GAGGTAGCCC AAGCTTGTCT
  GAACTCACAG TGAGCAAGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61445186	NES16826081	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		C	C	C	C		C
ss323135191	CHEV_9_99160854	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49328777					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445186	NES16826081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99142488 () rs orientation: forward

Symbol	Name	Function Class
Cep70	centrosomal protein 70	within coordinates
Gm18914	predicted gene, 18914	510 bp downstream
Gm47199	predicted gene, 47199	228 bp upstream