rs49329748 SNP Detail

Summary

• ID
  rs49329748
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164174363 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAAGAT GAAGGCTCTG
  TTAGGGAGAT GCTCTAGGCA CTGTTCAAAT TCCCTTTCTT TGGGTACTGT TTAGCTCCAT
  CTCTCCCTGG GTCCTTCCAC CCCTATGTTC ACCCCTTTTC AAATAGAAGC TCTGTGCATG
  AGGACTGTTC TGAGAACACA AGCTCAGGGC AGTGTCTGTG ACTGATTTCA GTGATGCTGT
  R
  TTGGAAGAGC TACCGTGCTA GGGAATGAAG GCCTGATCAA GTCCTGAAGA CTTCTGCAGC
  CTGCAGTCTC TTCCCCACTC TGAACTGAGA TATGTTCAGG AAGCAGAGAA GTCACCATGG
  GATGTTCTCA AAGTAAAAGG GAAGATTCCT GGGCATGATC TGATCTTGTG TCCTTGGAGA
  GGTCCAGGGA ACAGTACCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148223018	ENSMUSSNP3034814	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49329748					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164174363 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	322 bp upstream
Tssr744	transcription start site region 744	886 bp upstream
Tssr745	transcription start site region 745	929 bp upstream
Tssr746	transcription start site region 746	940 bp upstream
Tssr747	transcription start site region 747	953 bp downstream
Tssr748	transcription start site region 748	974 bp upstream
Tssr749	transcription start site region 749	1006 bp upstream
Tssr750	transcription start site region 750	1019 bp upstream
Tssr751	transcription start site region 751	1073 bp upstream
Tssr752	transcription start site region 752	1142 bp upstream
Tssr753	transcription start site region 753	1149 bp upstream
Tssr754	transcription start site region 754	1821 bp upstream
Tssr21562	transcription start site region 21562	280 bp upstream
Tssr21563	transcription start site region 21563	297 bp upstream
Tssr21564	transcription start site region 21564	316 bp upstream
Tssr21565	transcription start site region 21565	341 bp upstream
Tssr21566	transcription start site region 21566	351 bp upstream
Tssr21567	transcription start site region 21567	365 bp upstream
Tssr21568	transcription start site region 21568	375 bp upstream
Tssr21569	transcription start site region 21569	852 bp upstream
Tssr21570	transcription start site region 21570	914 bp upstream
Tssr21571	transcription start site region 21571	945 bp upstream
Tssr21572	transcription start site region 21572	962 bp upstream
Tssr21573	transcription start site region 21573	991 bp upstream
Tssr21574	transcription start site region 21574	1055 bp upstream
Tssr21575	transcription start site region 21575	1833 bp upstream
Tssr21576	transcription start site region 21576	1849 bp upstream
Tssr21577	transcription start site region 21577	1868 bp upstream
Tssr27433	transcription start site region 27433	910 bp downstream
Tssr27434	transcription start site region 27434	933 bp downstream
Tssr27435	transcription start site region 27435	961 bp downstream
Tssr27436	transcription start site region 27436	980 bp downstream
Tssr27437	transcription start site region 27437	1001 bp downstream
Tssr27438	transcription start site region 27438	1031 bp downstream
Tssr27439	transcription start site region 27439	1045 bp downstream
Tssr27440	transcription start site region 27440	1055 bp downstream
Tssr27441	transcription start site region 27441	1110 bp downstream
Tssr27442	transcription start site region 27442	1118 bp downstream
Tssr27443	transcription start site region 27443	1181 bp downstream
Tssr27444	transcription start site region 27444	1190 bp downstream
Tssr27445	transcription start site region 27445	1806 bp downstream
Tssr27446	transcription start site region 27446	1850 bp downstream
Tssr27447	transcription start site region 27447	1945 bp downstream