rs49329900 SNP Detail

Summary

• ID
  rs49329900
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:70411542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCACAGTT AAGGCCCACC CCCAGCAGGG CAGTCTCAGT
  GATGTGTGAG ATCCTCTCAT CTTCAGCCTC TGGAAGCTGG AAGAAGCAAT GAAGAATAAA
  R
  AATGCTTTAG TAGCTGTCGA CATCCGGCGT TATGTATGAT AACTGGAGAG CTAGCTTAAG
  GGCTGGGGGA GGGTGTGGGA AGACCTGTTA TCCCTGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss132372204	ENSMUSSNP4358886	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
ss323735936	CHEV_11_70334218	CHEVERUD	SCREENING_POP	f	SNP		G		A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs49329900					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:70411542 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3187	CpG island 3187	21 bp distal
Gltpd2	glycolipid transfer protein domain containing 2	within coordinates
Rr450318	regulatory region 450318	1510 bp distal
Rr450319	regulatory region 450319	476 bp distal
Tssr102724	transcription start site region 102724	1555 bp downstream
Tssr102725	transcription start site region 102725	1541 bp downstream
Tssr102726	transcription start site region 102726	1513 bp downstream
Tssr102727	transcription start site region 102727	1076 bp downstream