rs49330441 SNP Detail

Summary

• ID
  rs49330441
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:102336321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCTCCAG AGTGAACTTT
  GTAGACTACA ATATCAAAAG GTTGCACCTA GCAACCAGTG CCTCCACGGT CCTCAGGGCC
  GCGAAGGGAG GGGGAAGAGC CTGGAAGCGG CAGAAACCAG CCTCGGGTCT GGAAGCAGTG
  GCGGTCCGTG CCTTCCTGAC CTTCGGGCAC TAGGCAGTTC CCCAGGGCGG TGGGATTGGG
  A
  ACAGGGGAGG GTAAAGAGGG CAGGACCTGT GTTGTCCTCC AAAGAGGTCT GCTGTCGCCT
  CCTTCTCTAA GCAGCTGTGG AGGCGCGGGG CTCCAGCGGT CCAATCCGCA GCGTAGGAAG
  CAGCGGGGCG CTCGCCCGCC GCCGGAAGCC GCGATAGCAG CGGGGGCGAG GGACCCAAGG
  CAAGAGCCGC GCCCGGAGCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145571442	ENSMUSSNP817749	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49330441					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:102336321 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19528	CpG island 19528	within coordinates
Gm45527	predicted gene 45527	895 bp upstream
Rr652623	regulatory region 652623	within coordinates
Rr652624	regulatory region 652624	146 bp proximal
Trim68	tripartite motif-containing 68	within coordinates
Tssr73953	transcription start site region 73953	138 bp downstream