rs49334235 SNP Detail

Summary

• ID
  rs49334235
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:45231043 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA ATCTGGTTCA GAGACCCACA
  A
  ACAGACATGT GGAGAGAGTC TAAAC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148078311	ENSMUSSNP4583665	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss325166367	CHEV_16_45410793	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49334235					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:45231043 () rs orientation: forward

Symbol	Name	Function Class
2300009N04Rik	RIKEN cDNA 2300009N04 gene	1671 bp upstream
Cd200	CD200 molecule	1627 bp upstream
Cd200l1	CD200 molecule like 1	1088 bp downstream
Cpgi8295	CpG island 8295	1717 bp distal
Gm5406	predicted gene 5406	900 bp upstream
Rr318481	regulatory region 318481	1758 bp proximal
Rr325366	regulatory region 325366	1042 bp distal
Tssr138625	transcription start site region 138625	840 bp upstream
Tssr141234	transcription start site region 141234	1730 bp upstream
Tssr141235	transcription start site region 141235	1632 bp upstream