rs49334505 SNP Detail

Summary

• ID
  rs49334505
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:113622724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGGAGAT GGTGAGTATG
  ATTCCTTTTT CTTGTTGTGC TATGTTATAC ACTTGGTTTT AAGGTGATGA TTGTTTGCTA
  TGTAAGAGAT GTATTTCCCC TCAGAATGAA GGACATTTAC GTGCTTGTGT GTATTTTTGC
  TGTATATGGG GTTTTTTTTT TGGGGTGTCT TTCACTTGAT GTGTCAGTGT GGGGTCTGGC
  R
  AACATAAGGT GGGATTTACC TTGCAACCCA AGCACGGCTT TTTCAGTCTT TGGTATTGGG
  TCACCAAAGG GTAGTGGAAG GGTCAGGGAA TGTGTACAGG AGCTGTGGAG GAGAATGTGG
  CCTTTGGAGC AATGGCAGAT TTAGGCAGGG AGGTTTGATT AGCTAGCTTG ACATCTTTCC
  TGTTGTATTT GACAGAATTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61225176	NES16842653	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs49334505					SNP	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61225176	NES16842653	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:113622724 () rs orientation: forward

Symbol	Name	Function Class
Clasp2	CLIP associating protein 2	within coordinates
Tssr3045	transcription start site region 3045	355 bp downstream
Tssr87530	transcription start site region 87530	904 bp downstream
Tssr87531	transcription start site region 87531	814 bp downstream
Tssr87532	transcription start site region 87532	664 bp downstream
Tssr87533	transcription start site region 87533	587 bp downstream
Tssr87534	transcription start site region 87534	316 bp downstream
Tssr87535	transcription start site region 87535	298 bp downstream