rs49335306 SNP Detail

Summary

• ID
  rs49335306
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54751964 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCAGAACGTT CTGTTTGTAC ATTCTCTTAA TTATTCCCCC
  CAAAGGTGCG GTTGAGTTGC CTGCTCAAGT TCACACCCTT GATCCCAGAG CCTCCTCACC
  Y
  TCTGCATTAT TGCCCTACTT ATCTTGCCCC GTTCTTTGGT TTTGCTGAGG TAGGAAATAA
  TTTATTAGAA GCTTCATAGT AATAACCATA AAACATTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss132140180	ENSMUSSNP6372592	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49335306					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54751964 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2891	CpG island 2891	171 bp distal
Gm31490	predicted gene, 31490	within coordinates
Gm57377	predicted gene, 57377	within coordinates
Lyrm7	LYR motif containing 7	226 bp upstream
Rr386093	regulatory region 386093	within coordinates
Rr447403	regulatory region 447403	1614 bp distal
Rr447404	regulatory region 447404	341 bp distal
Rr447405	regulatory region 447405	518 bp distal
Rr447406	regulatory region 447406	237 bp distal
Rr447407	regulatory region 447407	35 bp distal
Rr447408	regulatory region 447408	within coordinates
Rr447409	regulatory region 447409	1650 bp proximal
Tssr3501	transcription start site region 3501	360 bp downstream
Tssr101539	transcription start site region 101539	302 bp downstream
Tssr101540	transcription start site region 101540	112 bp downstream
Tssr108005	transcription start site region 108005	535 bp upstream