rs49335548 SNP Detail

Summary

• ID
  rs49335548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:27491882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGCTATC TGTTATATCC
  TCTTAAACAG TCCTGTGTGA AGGGCTGGTC TAAATCAAGA ACAAACATGA GAACTACTAA
  ACATGAGAAC TACTAACATA GTTTCAGTTA ATTTTAAACA AGAAAAACTA CTCTACCAGA
  TACAGCCTCA TCCAACTTCC TAAAGCTTTT TCTTCTAGAT TTTGCACTTT TGAGGACAAA
  Y
  CCGTTGAAAC AAAGTTAACA TATTTCTGAA ATACTTTTTA TTTTGATTCA GGTTTTTCAT
  CTTTGGAAAA TGCTTGCTGG AAGAATGTGT TACAAATTAT GTTTCTTGGT GCTGTGCATG
  CATCTTGTAA AAATCTCTGC TAACTCTTTA AAGACTCCCA AGCTTTTCAG AAATGTATGC
  ACAAAAACAA TAGAATGCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61265605	NES16880808	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49335548					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61265605	NES16880808	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:27491882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1405	CpG island 1405	771 bp proximal
Gm36962	predicted gene, 36962	558 bp upstream
Lama2	laminin, alpha 2	within coordinates
Rr224629	regulatory region 224629	within coordinates
Tssr97144	transcription start site region 97144	919 bp downstream
Tssr97145	transcription start site region 97145	929 bp downstream
Tssr97146	transcription start site region 97146	945 bp downstream
Tssr97147	transcription start site region 97147	1009 bp downstream
Tssr97148	transcription start site region 97148	1043 bp downstream
Tssr97149	transcription start site region 97149	1133 bp downstream