rs49337024 SNP Detail

Summary

• ID
  rs49337024
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:128065565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGGTGGAT CAAATTCTAG
  AGTCACCTAC CTGTTACTAC TGTTAGTGCT TAAGGATACT GGCATTCCAA GGGGTGTTTC
  TGATACCCAC AGCTGGATCC CTCCAGCAGG GTGGTTAGTA TTCAGGAGGT CTTGTAAGCA
  TGAAGCTGGG GCCTCTAGCT GTCCCAGGCT GCAGTTCATA CCCCATTGCA TTTAGGAGAC
  R
  CCCTTCAGCT AAAAGGGTTA TCCCAGCAGT GTGATGTGGA GAGTCGGGAC AGAGTGAGAA
  AATCTGCCTA GTCCACAGAA AGTAAAACTT GACCAGCAGA CATCCCTGCT GCACAAAAAA
  GAAAAACAGC CACTGTGAAG ACAGATCTGG GAGACAGGAG ACAATCAGTA CCCATTCCAC
  AGCATCATAA GGCATAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61060891	NES16065790	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	G	A	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49337024					SNP	A	G	G	G	A	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61060891	NES16065790	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:128065565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19791	CpG island 19791	1603 bp distal
Gm32816	predicted gene, 32816	within coordinates
Rr368466	regulatory region 368466	1904 bp downstream
Rr656042	regulatory region 656042	1752 bp distal
Rr656043	regulatory region 656043	980 bp distal
Rr656044	regulatory region 656044	1494 bp distal
Tssr69425	transcription start site region 69425	1867 bp downstream