rs49338088 SNP Detail

Summary

• ID
  rs49338088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:30529462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAAATG GTGGAGGTCT
  TCTGTGATTA GTGGCTGCTG ACCCTATTCT CTGAAGACCA CTCTGGTCTC TAATGGAGAG
  CCGTCTCTCC CCTGGTGACC ATGGCCTTCC CACCCAGTTC TGCTAAAGCC AATGTCCCTT
  CTGTTGCCGT GTAATCTACA CTCCTGTGAC GCAGGCTCCT TTCTGAACTT TGAGTTTTCA
  Y
  CGAAGGACGT GGGGATGGAG AAATGCCTGC AGAGGGCTTG CAGAGCAGAG GTGATGCTCT
  GTCCTCTTCC TGAAGTGTGT CTCCCAGAAT CTCCTGGATT TGAAACTGCA TCTTCTGTCC
  TTTCCCGTCC TTCCAGCCTG GATTGTGTCT TCTCATCTCA CTGACTCCAT GAGCCCTGTG
  CACAGCATTT TATTTAATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52363798	NES15389168	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs49338088					SNP	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52363798	NES15389168	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:30529462 () rs orientation: forward

Symbol	Name	Function Class
Gm28806	predicted gene 28806	within coordinates
Tssr113087	transcription start site region 113087	391 bp downstream