rs49339383 SNP Detail

Summary

• ID
  rs49339383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18909837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCCTTCC CTCCTAGTTC
  CCCAGTTTCC GAGCCTGCTC TGACTGACAC CGCCAGCTGG TCCCGGGTTT CACAACTGGG
  TCTCTGTCAA AATACGGACT GGATAACGCC TTCCTGAGAG AGGAGGATTG TAGGAGCTAA
  TAGCTTCTGT GGATGAAGTG GATTGGAAGG TTAGGGCGGG GCTAATGACT TGAGGGCGGG
  Y
  TCTAAATTCT GAGGGCGGGG CTAACTCTAC TAGAGCGTCT GGTCCAAGGT TCCAGTCCTG
  AGATGTTCAA GGGGGTGTGG CTATTTGCTC TAGGGGCGGG ATTAGAACTT TTGTTGTTTC
  TAGATTTAGG GGGTGGAGCT AAGAGCCCTG GGGGCGTGTC TAGCTCTAAT AAACAAGGAG
  CGGGGATCCG GCTAGGATAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60972643	NES16155325	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49339383					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60972643	NES16155325	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18909837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18450	CpG island 18450	382 bp proximal
Eml2	echinoderm microtubule associated protein like 2	509 bp upstream
Gm71808	predicted gene, 71808	187 bp downstream
Rr155271	regulatory region 155271	1237 bp distal
Rr167138	regulatory region 167138	within coordinates
Tssr64790	transcription start site region 64790	504 bp upstream
Tssr64791	transcription start site region 64791	534 bp upstream
Tssr64792	transcription start site region 64792	571 bp upstream
Tssr64793	transcription start site region 64793	601 bp upstream
Tssr64794	transcription start site region 64794	736 bp upstream