rs49339695 SNP Detail

Summary

• ID
  rs49339695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:135717437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG GTAGGGGCAG CTCCTAGCTC
  R
  CTTTCGTTCC ACAGCCTTGA TTCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145546363	ENSMUSSNP1048779	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss319993391	CHEV_1_137686276	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49339695					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135717437 () rs orientation: forward

Symbol	Name	Function Class
Rr419276	regulatory region 419276	1406 bp distal
Rr419277	regulatory region 419277	1699 bp distal
Rr419278	regulatory region 419278	549 bp distal
Rr419279	regulatory region 419279	731 bp distal
Rr419280	regulatory region 419280	35 bp proximal
Rr419281	regulatory region 419281	306 bp proximal
Tnni1	troponin I, skeletal, slow 1	Intron