rs49340678 SNP Detail

Summary

• ID
  rs49340678
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:31469162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGTGGG CACTAATGGA
  GACCCCAGTA AGGAAGTAAA ATGAATGCTG TTATTTAATC AGCTATGGTT GTTGCTTGTC
  CTGTGTTATT ACTATGGCCT GAGATAACTT ATGTTGCAAT AACACATTTT TGGCCTAAAG
  AAAATATTTC AAAGACTTGT GCTGAAGCTT AGGCATTTGT GGCTTTCCGG AGCTGTCACC
  R
  GATCCAGACT GTTTTCTATT CCTACTACCA CTGAGACAAA CCACGGTAGT GGCACACTGC
  CTCCATCCCT CTCCCTCAGC TAGCCGGTGA CCACCCCACC CCCATCTCAT GCAGACATTT
  TAGACTCTGT ACATCAAACC CTACAAGTAC TAGTCCCTGC TTAGAACCAT AAATCCTTGC
  CACGGCACCG AATACTCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147445948	ENSMUSSNP4026009	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49340678					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:31469162 () rs orientation: forward

Symbol	Name	Function Class
Marchf6	membrane associated ring-CH-type finger 6	within coordinates
Tssr133930	transcription start site region 133930	1095 bp upstream
Tssr133931	transcription start site region 133931	1064 bp upstream
Tssr133932	transcription start site region 133932	1036 bp upstream