rs49342278 SNP Detail

Summary

• ID
  rs49342278
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27208511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC AGTACCCCAA CAGATGTGTG
  R
  CTTAGTTTCC ATATCAAGAA CCTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss52338322	NES15368969	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A		G	A	G
ss137459608	ENSMUSSNP6465865	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A				A
ss323958164	CHEV_12_27843377	CHEVERUD	SCREENING_POP	f	SNP								A				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs49342278					SNP	A	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52338322	NES15368969	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27208511 () rs orientation: forward

Symbol	Name	Function Class
Silc1	sciatic injury induced lincRNA upregulator of SOX11	within coordinates
Tssr115957	transcription start site region 115957	1935 bp downstream
Tssr115958	transcription start site region 115958	1965 bp downstream
Tssr115959	transcription start site region 115959	1986 bp downstream