rs49343226 SNP Detail

Summary

• ID
  rs49343226
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:81013235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGCCTAG TGGCGCATTG
  TGGCCTTTGA TCCGGGCTTT GACCTTGGCG CACAGCACCC AGTGGTTTGG GGAAGAGGTG
  TGTGTAGCAG AGGAGGTTTT TTCGTGCTTT GGTCCCAATC AATCCGGCAT CTTTGCAGTG
  CCGAGGTGGC CGTGCACCTT GGCTTTGAAT TCTTGTGCTG AGGTTATGTG ACTTGAGCCT
  Y
  AAGATAGGGT CTTCTAGCAC AGGCTTGCTC TTAAGTGTCG CAGTTGTCGG TTTCGGCGTT
  TGTTTAGAGC TGTGGACACA TCTGTGAACT TTTGATGCTT ATTTCAGAGG TCCTGGGTTG
  TACGTTTGAG TCACACTGTG AGCTCAGCTC CAATCTTGGG CCGACATCTG GTTCCTGCCC
  CTGCTGTGGG GTGCTATTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52388508	NES15267086	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49343226					SNP	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52388508	NES15267086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:81013235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1950	CpG island 1950	within coordinates
Eef2	eukaryotic translation elongation factor 2	within coordinates
Gm67815	predicted gene, 67815	332 bp upstream
Rr402079	regulatory region 402079	721 bp downstream
Rr435542	regulatory region 435542	760 bp distal
Rr435543	regulatory region 435543	343 bp distal
Rr435544	regulatory region 435544	within coordinates
Snord37	small nucleolar RNA, C/D box 37	1560 bp upstream
Tssr94695	transcription start site region 94695	753 bp downstream
Tssr94696	transcription start site region 94696	292 bp upstream
Tssr94697	transcription start site region 94697	408 bp upstream
Tssr94698	transcription start site region 94698	648 bp upstream
Tssr94699	transcription start site region 94699	1749 bp upstream
Tssr94700	transcription start site region 94700	1933 bp upstream
Tssr94701	transcription start site region 94701	1993 bp upstream
Tssr98570	transcription start site region 98570	1977 bp downstream