rs49344146 SNP Detail

Summary

• ID
  rs49344146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:55909899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCTAGAA TTCCTTGGGT
  AGTCGAGTTT GCAATTAGCG GAACTCGTTC GAGTGGCCCT GAAGGCTCAT CGAGGCTGCA
  CGCGGCTAGT TGCTAAGCAA AAGAATCTTT GGTCAACTGC CACCTGAGTC AAAGCAACAG
  GAAGTGAGTA CCGCTATGCC GGAAGCTGGT TAAAATCTCT TTTCTCATCC CTAAGTTAGC
  Y
  TCTTACTCTA AGTTGCCCTT TGCAGGGGCG AAAAAAGGGA GAGTAACTAG GTAAGGAAGC
  ACCTTCAGGA ACCATAATCT CTTCCCAATT CTCCCTAAAA ATCATACCTG GGATTGAAGC
  ATTAGGATAA TCCAGACACT GGATGGTCCC AGGGAGACTT GAAGAACCAC ACCCTGATCT
  GACTTTACAC AGTTTAAGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62405520	NES17238145	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49344146					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62405520	NES17238145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:55909899 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6505	CpG island 6505	16 bp distal
Gmpr2	guanosine monophosphate reductase 2	within coordinates
Nedd8	neural precursor cell expressed, developmentally down-regulated gene 8	562 bp upstream
Rr492562	regulatory region 492562	329 bp distal
Rr492563	regulatory region 492563	387 bp distal
Rr492564	regulatory region 492564	197 bp distal
Tssr125802	transcription start site region 125802	1290 bp downstream
Tssr125803	transcription start site region 125803	144 bp downstream
Tssr125804	transcription start site region 125804	127 bp downstream
Tssr125805	transcription start site region 125805	51 bp downstream
Tssr128855	transcription start site region 128855	573 bp upstream
Tssr128856	transcription start site region 128856	524 bp upstream
Tssr128857	transcription start site region 128857	317 bp upstream
Tssr128858	transcription start site region 128858	295 bp upstream
Tssr128859	transcription start site region 128859	263 bp upstream
Tssr128860	transcription start site region 128860	234 bp upstream