rs49345264 SNP Detail

Summary

• ID
  rs49345264
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17692182 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATA TAGTATGAGA AGTTCCATGA
  G
  AGTCTTGGAG AACCAGAGAG TAGGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133020640	ENSMUSSNP3467438	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321756043	CHEV_6_17642183	CHEVERUD	SCREENING_POP	f	SNP			G	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49345264					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17692182 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17178	CpG island 17178	1492 bp proximal
Gm55211	predicted gene, 55211	1243 bp upstream
Gm55212	predicted gene, 55212	1754 bp upstream
Rr626833	regulatory region 626833	20 bp proximal
Rr626834	regulatory region 626834	1394 bp proximal
St7	suppression of tumorigenicity 7	1397 bp upstream
Tssr55085	transcription start site region 55085	1424 bp upstream
Tssr55086	transcription start site region 55086	1722 bp upstream
Tssr55087	transcription start site region 55087	1782 bp upstream
Tssr55088	transcription start site region 55088	1822 bp upstream
Tssr55089	transcription start site region 55089	1868 bp upstream
Tssr55090	transcription start site region 55090	1987 bp upstream