rs49346787 SNP Detail

Summary

• ID
  rs49346787
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139071444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCCC TTAGCCAACC AAGGCTCTTC
  Y
  CCAGGCTCAA GATGCAGGAG GCAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147670742	ENSMUSSNP7056292	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321381212	CHEV_4_138900048	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49346787					SNP	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139071444 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	1167 bp downstream
Cpgi15166	CpG island 15166	1644 bp proximal
Gm13019	predicted gene 13019	800 bp downstream
Gm70501	predicted gene, 70501	within coordinates
Rr603197	regulatory region 603197	within coordinates
Rr603198	regulatory region 603198	1575 bp proximal
Tssr44225	transcription start site region 44225	1862 bp downstream