rs49347807 SNP Detail

Summary

• ID
  rs49347807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:96286195 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGCCACA GCCCCACCTT
  CCCCTGCCTC CCCACCGTAG TAGTCGTAGT ACATGGGCTG AATAGCCACC TTCGAAGGCC
  CGCTGGTTTC CGGTTGCCTG TTTACCCTGA AGTTCTGCCC AGCATCCTTC TGCTTGTTGG
  ACTTAGTGGA CATTCTTTGC CCTTGGGAGT AGGAGTGGGG CCATTCAGCA TAGGTATGTA
  Y
  AGAAAACGAA TTCGTTGTCA GGGCAATATT TGATTCGTGA AAGGGGAGCT CAAAGACCAA
  CTTCTCCCAG AGGTGGAGCG AGGACAGGGA AGGGCCAGCC TTCCTCGTCT TGGCCGTGAT
  CCAGTCGCTG TAGTCTGCCA CACTGGTGTA CAGAAACAGG CCAGGGCACG AGTCGCCTCC
  ATAGGCCAGG AGTCCTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60650953	NES16266216	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49347807					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60650953	NES16266216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96286195 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc113	coiled-coil domain containing 113			677 bp downstream
Prss54	serine protease 54			Coding-NonSynonymous
				Noncoding-Transcript-Variant