rs49349951 SNP Detail

Summary

• ID
  rs49349951
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:69714369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGC ACTGACTGCT CTTAAGGTCC
  S
  GAGTTCAATT CCCAGAAACC ACATG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146730632	ENSMUSSNP267891	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320332410	CHEV_2_69722082	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49349951					SNP	C	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69714369 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11720	CpG island 11720	1208 bp proximal
Mettl5	methyltransferase 5, N6-adenosine	within coordinates
Mettl5os	methyltransferase 5, opposite strand	1657 bp upstream
Rr44276	regulatory region 44276	within coordinates
Rr50128	regulatory region 50128	769 bp distal
Rr56967	regulatory region 56967	231 bp proximal
Rr397023	regulatory region 397023	860 bp upstream
Tssr24451	transcription start site region 24451	1532 bp downstream