rs49350479 SNP Detail

Summary

• ID
  rs49350479
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60722267 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGGGC AAGGATGAGG
  GCTGAGACAA GTACCCTGCT GGCTCCATCA GCATCAGAGG TCCCTGATGC CCCCTATCCT
  TGGGGGACCT CTGGGTCAGT GCTTGGCCTG AAGGCTCTAG GCACAGCTAG TACTCTTTGT
  GTTCGGTCCA TCCTTCTTCC TTTGTCTTTG CTGTGGGTGG CACCTGTGCT TGGTACCAGA
  Y
  CTTTGAAGAT GTCATTATTC TCTCCCCTGC TAGGCTGTAT TGTAGCTCTC CTGTGTGCTG
  GCCTTCCCTT CAGCCGTGCA TGGAACTCTG GGGACCTGAC CTCTGCACAG CCAGATCCAA
  AACATGACCT TGGTTAGTGT TAGAACACCG TGCCCTGGGT CTAGTGTTTT TCCCACAACA
  GATGTACCAG AGGCGGGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61278415	NES16780551	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49350479					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61278415	NES16780551	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60722267 () rs orientation: forward

Symbol	Name	Function Class
Gm66331	predicted gene, 66331	910 bp downstream
Rr432237	regulatory region 432237	920 bp distal
Rr432238	regulatory region 432238	33 bp distal