rs49350660 SNP Detail

Summary

• ID
  rs49350660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:85590699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACCTTGG TGGCCTTTAA
  CAAATGACAC CCTTCCCCCA TTGTGGCCAT TCCTGTGCTC AGTGCCCCGT GCTTTCTCTC
  TCTTCTCCCC GTTTCCCCGT CTCCCCGTCT CCCCTTACTC TCTCTGTGAT TTTGTTTAAA
  TGTCCCTGGC CCATTTTGAG AAAATCCCAG TCTATTAATA CCCTCAGCAC TGAGCGGCCT
  R
  TGTCGGGGGT GGGGGGTGGG GCTCACCATG TCCCCAGCTC TCCTTCTTCC TCTAGGAGGG
  ACCTCAAGAA GCCACAACAT CCAGCTCTAC GCCAAGACTG ACTGACGGCC TTTGGGGTGA
  GGTAGTAGGT TGTATGGTTT TGGGCTCTGC CCCGCTCTGC GGTAACTATA CAATCTACTG
  TCTTTCCTGA AGTGGCCGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148271242	ENSMUSSNP7204606	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49350660					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:85590699 () rs orientation: forward

Symbol	Name	Function Class
Lncppara	long noncoding RNA near Ppara	within coordinates
Mirc31	microRNA cluster 31, including Mirlet7c-2 through Mirlet7b	105 bp proximal
Mirlet7b	microRNA let7b	821 bp upstream
Mirlet7c-2	microRNA let7c-2	105 bp upstream
Rr507292	regulatory region 507292	89 bp distal
Rr507293	regulatory region 507293	643 bp proximal