rs49351399 SNP Detail

Summary

• ID
  rs49351399
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30735482 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACTATG TAGCCTGGGC
  TGTCATGGAA CTTGCTATGT AGTCCAGGCT AGCCTCAAAC TTGCTGCCAT CTTCCTTCTG
  TTTCCCAGGT GCAAAGATTA CAGGAATACA TCACCACACC CATCAATAGC AAAGATATTT
  GTCTGTCTTG TTCATGGCTG TCTGGCACAC GCATGAATCC ACGCTGAATA CACAGTTGAA
  K
  GGGTGATGTG GGCATGTCTA TGTCATCAGT GGGGGTTCAA TAAGCAGGAA GGGGGGATAT
  CAGAGGGGAA GAATCAGGAT GACCAAATGG AGCCCCTGCT GGTCTACAAC TGCTCTTAAG
  TTGTATAAGT GAATCTATAG TGACCAGAAG ATCTGCCCCA CTGAGCCCAG CCTTAATTTC
  AATTTTGAAA ATTTAGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148696856	ENSMUSSNP5540933	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss322138590	CHEV_7_31821076	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49351399					SNP	T	G	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30735482 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	786 bp upstream
Gm71772	predicted gene, 71772	932 bp upstream
Rr644978	regulatory region 644978	1699 bp distal
Rr644979	regulatory region 644979	978 bp distal
Rr644980	regulatory region 644980	1033 bp distal
Rr644981	regulatory region 644981	842 bp proximal
Rr644982	regulatory region 644982	943 bp proximal
Tssr2191	transcription start site region 2191	572 bp upstream
Tssr65830	transcription start site region 65830	789 bp downstream
Tssr65831	transcription start site region 65831	931 bp upstream
Tssr65832	transcription start site region 65832	1351 bp upstream
Tssr65833	transcription start site region 65833	1748 bp upstream
Tssr65834	transcription start site region 65834	1802 bp upstream
Tssr71891	transcription start site region 71891	400 bp downstream
Tssr71892	transcription start site region 71892	961 bp downstream
Tssr71893	transcription start site region 71893	1803 bp downstream
Tssr71894	transcription start site region 71894	1824 bp downstream
Tssr71895	transcription start site region 71895	1837 bp downstream
Tssr71896	transcription start site region 71896	1867 bp downstream