rs49351533 SNP Detail

Summary

• ID
  rs49351533
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126187808 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGCCTCAG CTAAACTGGA
  TATTTATGAA GACCTTGAAT CTAGGAGTCT GATTAAGCCA GTGAGGAACC TGCTCCACTG
  GCATCGATCA TGGATTCCTT TCCCGGTGCC CTTTCACATC TGTCTCAGCT ACTCGGAAGG
  CTACCCGGAA GACTGGGCTG GGGAAACTAT TTTCCCCTAA ATTTCCCCAG TATGCTCACC
  Y
  GCCACCCAAT GTGAGATAAG ACCAGCAAGT GTAAGTGTGC TTGCGTGTAA GATAGCACAC
  TTCTGGGGTG GAAACCAGCC CAAAGGAAAG AGGTTCAAGG GGCTGAGCAA GGGACACCAC
  TTGGAGTCCA CGGCCACCGG CAACAGATCA GTTGCTTTGA GTTTCCAAAA TGACGGCTCG
  GTATCACAGC TCTGCAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145874679	ENSMUSSNP7111453	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49351533					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126187808 () rs orientation: forward

Symbol	Name	Function Class
Apobr	apolipoprotein B receptor	within coordinates
Il27	interleukin 27	374 bp downstream
Tssr69041	transcription start site region 69041	759 bp upstream
Tssr74769	transcription start site region 74769	1099 bp upstream
Tssr74770	transcription start site region 74770	1065 bp upstream
Tssr74771	transcription start site region 74771	529 bp downstream
Tssr74772	transcription start site region 74772	602 bp downstream
Tssr74773	transcription start site region 74773	620 bp downstream
Tssr74774	transcription start site region 74774	663 bp downstream
Tssr74775	transcription start site region 74775	765 bp downstream
Tssr74776	transcription start site region 74776	772 bp downstream
Tssr74777	transcription start site region 74777	811 bp downstream
Tssr74778	transcription start site region 74778	1184 bp downstream
Tssr74779	transcription start site region 74779	1420 bp downstream
Tssr74780	transcription start site region 74780	1617 bp downstream