rs49351774 SNP Detail

Summary

• ID
  rs49351774
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:137042829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAATGGTT ATGTATGCTA CCTTAGCCTA ACAAGTCTAG
  AAACCAAGGT CAGGTTTCTT TTCTTGTTCT AATTATTTCT GTAGGCACTG TGAAATGACC
  Y
  CCCAGAATCT CACTTCCTTT ACTATACAGC ATTAGAGAGA GGCACAAATT CATCCTCATT
  TCCCCAGGGC GAATCTAGGC CCTTAGAGGA CAAGTATGT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135939613	ENSMUSSNP6506823	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320975352	CHEV_3_137000032	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49351774					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:137042829 () rs orientation: forward

Symbol	Name	Function Class
Tssr35852	transcription start site region 35852	938 bp upstream