rs49352000 SNP Detail

Summary

• ID
  rs49352000
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114861300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGA GATGATGGGT AGCCCAGGCT
  K
  ATCTCAAACT TTCGGTAGTC GTTCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145783831	ENSMUSSNP2988807	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49352000					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114861300 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	868 bp distal
D8Mit139	DNA segment, Chr 8, Massachusetts Institute of Technology 139	391 bp proximal
Gm56821	predicted gene, 56821	1575 bp upstream
Nudt7	nudix hydrolase 7	within coordinates
Rr401147	regulatory region 401147	851 bp downstream
Rr670353	regulatory region 670353	908 bp distal
Rr670354	regulatory region 670354	within coordinates
Tssr79531	transcription start site region 79531	963 bp downstream
Tssr79532	transcription start site region 79532	930 bp downstream
Tssr79533	transcription start site region 79533	898 bp downstream