rs49352522 SNP Detail

Summary

• ID
  rs49352522
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47792118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTATGACC TCTAAACAGA
  AGCATATCTG ATATCTGAAT GGACAACTGG AGTAGACTGT GAGGAACTGT AGTAGAAAAA
  ATGGAGTGCA ATGATGGTCT GGGGCACACA ATGCCTTGTG GGTTTTATAT GGCTATTAAA
  AGATGCTCTG TGAGAAAGGG CTGCCAACAT TCCATCTGAG TTGGGGAGCT TTTGGGGGAG
  W
  TACAGGCAGT GCACGATGCT GAGTGGGTAG GAGGAGAAAG AGAGAGTCAG ATTTTCTTCA
  GGGAACAGCC TCCTCATTGC TTTCCCATGT TCAAGTAGTT AGCTCTACCC CCACCCGTGT
  GCATACAGGC AACATGAATT GCATTCATTA GAGGTGTGTG TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61788341	NES17719901	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49352522					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61788341	NES17719901	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47792118 () rs orientation: forward

Symbol	Name	Function Class
D13Mit90	DNA segment, Chr 13, Massachusetts Institute of Technology 90	126 bp proximal
Rr283868	regulatory region 283868	919 bp distal