rs49354660 SNP Detail

Summary

• ID
  rs49354660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:62319843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGCAGACA TGGTGCTTGG
  GAGTAACTGA GAGTTTTATG CCTGGATTAG CAGTATAAAG GATAAACTGG GCCTGGTTTG
  AGCATCTGAA ACCTCAAAGC CCACGCCTAG CGACACACTT CCTCTAACAA AGCCACACCC
  ATTCCAACAA GGCCATATGT CCTACTCCTT TCAAATAATG CTACTCCCTA TAAGCCTATG
  R
  GGGACATTAA ATTCAAACTG CCACATGATA ATTAGCTCCC CCATTCCACA GGGTCTTAAT
  TTCTTTGGCC ATTTTCATGA TCCAGTTATA TATGTATGGT AGGAGGAGGT GATGAGTGTG
  GGCTTTGGAA ATAAGCAATC GTTGACTCCA TAGCTCCTGA GGCACTCCCC CCTCTCTGCC
  TCCCTGTCTC TGTCTCACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136549497	ENSMUSSNP5156808	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss322982285	CHEV_9_62260368	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49354660					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:62319843 () rs orientation: forward

Symbol	Name	Function Class
Gm40523	predicted gene, 40523	1776 bp downstream
Rr196313	regulatory region 196313	758 bp proximal
Rr196314	regulatory region 196314	1358 bp proximal
Rr201157	regulatory region 201157	42 bp distal