rs49356025 SNP Detail

Summary

• ID
  rs49356025
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:30329177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCAGTCT GGCACTGACT
  GACTTGAGCA CACACATTCA TGTACACAGG GCTCTTGTTC AGACTTGCTC TCCAGACCCA
  GGGACACAAA CAGTGGCAGG TGTCAGCACA CACCAGTGCA CACAGCAAAC AGGGAAGACT
  TACGCCTGCA TTTGTAGCCT TGCTTGTTGA GGCCCCTGAA AGGCAAAGCC CCGACAGAAT
  R
  AGTGAGAATG CTCCAGTCCA GTCCTTCCCT CCCTGCGCCA CCTGCAGCAG GGCTCACCAG
  CTCTCACCAG ACAAACTCTT TGCACACAGA ACAGAAGGTG GGCTGCCCGA AGAAGGTGGC
  GATAAACTCG TGGTTCTTGA TGTAGTGGAT CTTGGCCTGT TTAATGGCTC CACGACGGTT
  CATGGTTGGA AACTTTGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52709022	NES15548872	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49356025					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52709022	NES15548872	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:30329177 () rs orientation: forward

Symbol	Name	Function Class
Gm62449	predicted gene, 62449	653 bp upstream
Prkcd	protein kinase C, delta	within coordinates
Rr292184	regulatory region 292184	within coordinates
Rr292185	regulatory region 292185	823 bp proximal
Rr404042	regulatory region 404042	529 bp upstream
Tssr4362	transcription start site region 4362	1311 bp upstream
Tssr4363	transcription start site region 4363	549 bp downstream
Tssr124839	transcription start site region 124839	691 bp upstream
Tssr127872	transcription start site region 127872	507 bp upstream
Tssr127873	transcription start site region 127873	559 bp downstream
Tssr127874	transcription start site region 127874	588 bp downstream
Tssr127875	transcription start site region 127875	603 bp downstream
Tssr127876	transcription start site region 127876	1925 bp downstream