rs49356346 SNP Detail

Summary

• ID
  rs49356346
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:27386276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TTGTTGTTGT TTTTTTTTTT
  W
  AAATCTCTTT GAGGACCCTG GAGGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss137464409	ENSMUSSNP5986066	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss323959674	CHEV_12_28021142	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs49356346					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:27386276 () rs orientation: forward

Symbol	Name	Function Class
Rr464224	regulatory region 464224	125 bp distal
Rr464225	regulatory region 464225	635 bp proximal
Rr464226	regulatory region 464226	1517 bp proximal
Sox11	SRY (sex determining region Y)-box 11	within coordinates
Tssr113042	transcription start site region 113042	54 bp downstream
Tssr113043	transcription start site region 113043	92 bp upstream
Tssr115960	transcription start site region 115960	1498 bp upstream
Tssr115961	transcription start site region 115961	1133 bp upstream
Tssr115962	transcription start site region 115962	692 bp upstream
Tssr115963	transcription start site region 115963	213 bp upstream
Tssr115964	transcription start site region 115964	127 bp downstream
Tssr115965	transcription start site region 115965	190 bp downstream
Tssr115966	transcription start site region 115966	279 bp downstream
Tssr115967	transcription start site region 115967	551 bp downstream
Tssr115968	transcription start site region 115968	565 bp downstream
Tssr115969	transcription start site region 115969	642 bp downstream
Tssr115970	transcription start site region 115970	667 bp downstream
Tssr115971	transcription start site region 115971	710 bp downstream
Tssr115972	transcription start site region 115972	844 bp downstream
Tssr115973	transcription start site region 115973	1210 bp downstream
Tssr115974	transcription start site region 115974	1258 bp downstream
Tssr115975	transcription start site region 115975	1298 bp downstream
Tssr115976	transcription start site region 115976	1320 bp downstream
Tssr115977	transcription start site region 115977	1334 bp downstream
Tssr115978	transcription start site region 115978	1966 bp downstream