rs49356696 SNP Detail

Summary

• ID
  rs49356696
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144636761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGGGGTTT GAGTTCAGAC TTCCAGAAAC CACGTTTAAA
  AAAACAACAC AGGCATGCAG TATAAGCCTG TCTCACTAGT GGTCATAGGC AGAGACAGGG
  K
  GATCCCTGAG GCTCACTTCT CAGCTACTCT CACCAACTCA GTGAGCTTGA TGGTCAGGGA
  AAGGCCTTAT CTCAAACAAT ACAGTGGAGA GTGACTAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133954178	ENSMUSSNP1588596	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss322064324	CHEV_6_144639555	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49356696					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144636761 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr400038	regulatory region 400038			1560 bp downstream
Rr640978	regulatory region 640978			1563 bp distal
Sox5	SRY (sex determining region Y)-box 5			Intron
				Noncoding-Transcript-Variant
Sox5os3	SRY (sex determining region Y)-box 5, opposite strand 3			within coordinates