rs49358918 SNP Detail

Summary

• ID
  rs49358918
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54814866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG CGAGCGGCCC AGGTGCCGGG
  C
  GCCCGCGATC CCGAAGCATG CCCCA                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139565750	ENSMUSSNP4406852	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss324638265	CHEV_14_55196246	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49358918					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54814866 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	within coordinates
Cpgi6463	CpG island 6463	within coordinates
Gm63340	predicted gene, 63340	186 bp upstream
Rr389677	regulatory region 389677	within coordinates
Rr404101	regulatory region 404101	746 bp upstream
Tssr128601	transcription start site region 128601	1701 bp upstream
Tssr128602	transcription start site region 128602	71 bp downstream
Tssr128603	transcription start site region 128603	118 bp downstream
Tssr128604	transcription start site region 128604	134 bp downstream
Tssr128605	transcription start site region 128605	152 bp downstream
Tssr128606	transcription start site region 128606	169 bp downstream