cttgtataa atgcttgaac tttgtgttgg gataTGGCTG CCTCAGGGAA TAGCTTTTCT GAGCTGAAGA TGAGTTCGCT CAGTCTCGGG TTAGGGTCAT CCTGCTGAGG TACCTCCTCC TTCCCTGCTC ATGGGTGACT CACAGATTTC M GTTCCTGCTG CTGAGTACAG ACAGACTCTG CCCCAGCTCT GCTTTGGCAC ACGTGGTCCC GTGTTTTCTT CTCCAGCCTC TGAGAGGGCT CTTCCTGCGA GCATGCAGGG TCACACCCTT AACTTTGCAA GCAGTGCCTC TGGAGATCTG M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss60804037 | NES16474641 | PERLEGEN | MM_PANEL2 | f | SNP | A | C | A | C | C | C | C | A | C | A | C | C | A | C | C | |||
ss145543576 | ENSMUSSNP5458023 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | C | ||||||||||||||||
ss319992570 | CHEV_1_137607834 | CHEVERUD | SCREENING_POP | f | SNP | A | C | ||||||||||||||||
SNP Consensus Information | |||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs49360302 | SNP | A | A | C | A | C | C | C | C | A | C | A | A | C | C | A | C | C | C |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss60804037 | NES16474641 | PERLEGEN | MM_PANEL | f | SNP | A/C |
Location: Chr1:135638995 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm57161 | predicted gene, 57161 | 119 bp downstream | ||||||
Rr419242 | regulatory region 419242 | within coordinates | ||||||
Tssr8966 | transcription start site region 8966 | 115 bp upstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/18/2025 MGI 6.24 |
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