rs49360550 SNP Detail

Summary

• ID
  rs49360550
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101937736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAG GTGGGAAGGG AAGACAGAAA
  C
  ACACGCCTCT GACTGTTCCT GGGAC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148490968	ENSMUSSNP2228087	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	A/J
rs49360550					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101937736 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7794	CpG island 7794	829 bp distal
D15Mit40	DNA segment, Chr 15, Massachusetts Institute of Technology 40	1 bp proximal
Krt18	keratin 18	within coordinates
Rr311450	regulatory region 311450	within coordinates
Tssr133313	transcription start site region 133313	1090 bp downstream
Tssr133314	transcription start site region 133314	1066 bp downstream
Tssr133315	transcription start site region 133315	580 bp upstream