rs49361192 SNP Detail

Summary

• ID
  rs49361192
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117640713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCAGCACC CGAGTTCCCG
  TCTTCACATC TCTGCAGTCG CAGACGTCCT GTAAGCCCTG CGCACATCCA CATTCGTTGG
  AGGACTTATC AGAAAACAGT TTGGCTGTTT AATTGGGACA GCTTTTATTC TGTCTGGGTG
  GTATTCTGCG AATGCGGCTG GCATGGTCTT TACTCATTGG GAAATGAAAG TCACACTCAG
  R
  TTTTTCTCTT CTCTGGTCTT CAGTGTTACC ACGCCCTTAT TCTGCCTGGT TTGAAGGGTC
  GGGGAGAGTG CCAGGGGTGT CTCTCCAAAG TCTGGAGGCT CCTCTCTGTT CTTAGGAACA
  CTGGTCAGTC TGGGCATGGT GACAGACGCC TTTAATGTCA GCATTTAAGA GGCAGATCTC
  TCTGAATTCA AGGCCAGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52226341	NES15327815	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		A	G	G	A		G
ss323499614	CHEV_10_117241864	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49361192					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52226341	NES15327815	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117640713 () rs orientation: forward

Symbol	Name	Function Class
Gm67590	predicted gene, 67590	within coordinates
Rr218193	regulatory region 218193	488 bp proximal
Rr221673	regulatory region 221673	1503 bp proximal
Rr225990	regulatory region 225990	within coordinates
Rr385360	regulatory region 385360	458 bp upstream