rs49361246 SNP Detail

Summary

• ID
  rs49361246
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:80309233 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTCAGAT GGAAGGGGAA
  AAAGTACCTC TGGTTGACAG AGGACACAAT GGTGGAGATG TAAACAGATC CCCCAGTCAC
  GAGTCAGCCA CACACGTTCA TGCCATTGTT ACCGTCAGCA CTGTGTCTTC TCTAAGCTCT
  CGGCCAAGGA AACAACTGTT TCTGGGATAG AGACAGCAGA TTTATGGACT ATTTTATAAG
  M
  ACTTCTAAAC TATGGCTCTA AACCTAACAG AGAGAGCAAT AATGGTGCTC TATCTGCTCA
  TTCACTCCAT AAATATTTTC CGAATACCTT CTGCGTGTCG GGGAACAAGC TAGACATCCT
  GTGTATTTAA TAATGATGAA AAATCCACAA TTTTCCCCAC AAGTACATCA GAGACAGACT
  TGGAAGCAAA GATGTGCCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61654860	NES17611988	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49361246					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61654860	NES17611988	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:80309233 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4813	CpG island 4813	1407 bp distal
Gm47766	predicted gene, 47766	891 bp downstream
Rr468869	regulatory region 468869	1598 bp distal
Tssr116881	transcription start site region 116881	1954 bp upstream
Tssr116882	transcription start site region 116882	1916 bp upstream