rs49361856 SNP Detail

Summary

• ID
  rs49361856
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:191491278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGTGAAG CACAGGCTAC
  TGTGTGCACA TGCACACACA GTGGTTTGCA TAAATGGTAC ACAGGCTACT GTGTGCACAT
  GCACACACAG TGGTGTACAT AAGTGAAGCA CAGGCTACTG TGTGCTCATG CACACACAGT
  GGTGTACATA AATGGAGCAC AGGTTACTGT GTGCACATAC CCACACAGTG GTGTACATAA
  R
  TGGATTACAG GCATACACAC GCACTTTTTT AAATTAAAAA ACAAAACAGA ACTAAACAGA
  ACTCAGCACC ATGTCTGAGG TCCTTCCTGT CTGGGCTTCT CTGCTTTTTT GTCACCTACC
  ACTGTCATCT CCATGTCGAC CAGGACGCTA CTCTTATTTC TTTGTTTTTT TCTTTGTTTG
  TAAGGCATAG TCTTACTGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60360889	NES15859492	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49361856					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60360889	NES15859492	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:191491278 () rs orientation: forward

Symbol	Name	Function Class
Lpgat1	lysophosphatidylglycerol acyltransferase 1	Intron
Rr426214	regulatory region 426214	405 bp proximal