rs49363633 SNP Detail

Summary

• ID
  rs49363633
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:87689294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTCCTCA GACAGACATA AGCAGTGCAG ATGTGACTGC
  CTGCCTGTGA CCCTGGCATT CAGACATGCT AGCACCAGAG CAGCTGCCTC CAGGCTCAGC
  R
  CAGTACCTGT CTATTATGGT GGGCTTTGAG GACAGTGTGC CCATGCCAAC CTTGGAACCC
  CACGTGCACT TATGCAACAC ACTCACACAC ACACAGTCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss62488335	NES17265727	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	A	G	A		A	A	A		G
ss139905524	ENSMUSSNP4970894	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss324697510	CHEV_14_87851665	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49363633					SNP	A	A	G	G	A	A	G	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62488335	NES17265727	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:87689294 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr404242	regulatory region 404242			352 bp upstream
Rr496366	regulatory region 496366			within coordinates
Rr496367	regulatory region 496367			414 bp proximal
Tdrd3	tudor domain containing 3			Intron
				Noncoding-Transcript-Variant