rs49364589 SNP Detail

Summary

• ID
  rs49364589
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154032497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGTTGGA TCTACTCTGC AAAGAAACAA AACCGTCTCT
  GTCGGGAGCA GCAGAGCTGC GTGAAGAGGG GCGGAGGTGG GGGAGGGCAC ACTGGAAGGA
  R
  CAGGGTCAAG ATCACCCACT ATCAGTCCCC CACTTCTCAG TGATGAACTT GGCTTGCCTT
  TGTCTAGGGG TTGGACTCCC TAGTGCCTCT TTCTCCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148023903	ENSMUSSNP6639025	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320569690	CHEV_2_154016313	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49364589					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154032497 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	241 bp upstream
Rr567774	regulatory region 567774	within coordinates
Rr567775	regulatory region 567775	252 bp proximal
Rr567776	regulatory region 567776	478 bp proximal
Rr567777	regulatory region 567777	1613 bp proximal
Tssr20971	transcription start site region 20971	172 bp upstream
Tssr20972	transcription start site region 20972	186 bp upstream
Tssr20973	transcription start site region 20973	199 bp upstream
Tssr20974	transcription start site region 20974	229 bp upstream
Tssr20975	transcription start site region 20975	256 bp upstream
Tssr20976	transcription start site region 20976	691 bp upstream