rs49365442 SNP Detail

Summary

• ID
  rs49365442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:18090178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTTGTCC TGTCTGTCCC
  TCCTTTCTCT TTATTTTCAG TAAAAAAAAA TGTAGTATAA TATATGCAGA AAATATTGTA
  CAGACCATTT CTTGATAAAT CTTCCCATGG TTAATGTGTC TGTGTTAATA GGTCTATGTA
  ACCAACACTG AATAAGGAAA GAAAGCATTC TTGAGCCCTC TCTCAATCTG CACTGTAAGT
  R
  TAAGCATTGT CATATATATA CTTGACATAT TAGGTGCCTG AGGATTCTTA GGCTACAGGC
  TATGAAATTC TAGCCAGCCT GGGTTTAGCA ACAGTTGAGT TCAAGGCTAT CCTGAGCAAT
  TTAGTGAGAT CCTACCTGAA AAAAATATTA AAAAGCAATG GAGCCTGGTG TGGTGGTACA
  CACCTTTAAA CCAAGCACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60545764	NES16558046	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49365442					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60545764	NES16558046	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:18090178 () rs orientation: forward

Symbol	Name	Function Class
Gm36907	predicted gene, 36907	within coordinates
Rr340653	regulatory region 340653	1223 bp proximal
Tssr5021	transcription start site region 5021	1225 bp upstream
Tssr5022	transcription start site region 5022	1249 bp upstream
Tssr5023	transcription start site region 5023	1778 bp downstream