rs49365894 SNP Detail

Summary

• ID
  rs49365894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40502905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCTGCAGA CTATGGCTGA
  AGCAGCCAGA ATGAGAAACA GGTCTGCCAT GTCACATCGG GACATTTTCC TACTTACTGA
  AATGTATCTG TCACTGTGCG ACAGCTAACT TTTGTGATAC TCCTATGAAA TGTGTAGGGA
  ATTTGGACAG AACAGAATCA ATCTATAGTC AGAGGTCCTC TGGACAGTCT TTTCCAGGAG
  Y
  ACACACAGAC CGTGAGGTCC TAGGCACCCA GGAAACGGAT CCAGAGCCCA GGCAAGTGTC
  TTACAGGTAC CTTGAATTTT GCCAATAGAT ATGAGCCCTG CCTTAGCTGA GTTGCTCAGT
  CGGTGATGGG ACTCCAGGCT GAGGTGACAA TGAACACAGA ATTTGGGAGA CTCTTGAAAG
  GAGGGGAATG TTGAACTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721696	NES16361171	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49365894					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721696	NES16361171	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40502905 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1807 bp upstream
Rr16188	regulatory region 16188	1696 bp proximal
Rr29358	regulatory region 29358	1895 bp proximal
Rr371160	regulatory region 371160	1508 bp upstream
Tssr6462	transcription start site region 6462	1496 bp downstream
Tssr6463	transcription start site region 6463	1412 bp downstream
Tssr6464	transcription start site region 6464	1387 bp downstream
Tssr6465	transcription start site region 6465	1896 bp upstream
Tssr6466	transcription start site region 6466	1958 bp upstream