rs49366423 SNP Detail

Summary

• ID
  rs49366423
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122967320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATTGTGTGA CATGACAACC TGTTGCTGCA ATTGGTTCTC
  ACATACTACA GAGCCTTAGA GAGAGAATGA GTTGTGCTTT CTGAGGGAGG CAGGTCTTTT
  M
  TTGAAATGGC TTCAGAAATC ACTTATGCAG AAGTGAGGAT CACGAATGAA TCCGACTCCT
  TGGACACCTA CTCAAAATGT CCTGCAGGTA AAACAAAACA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss60937743	NES16191467	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49366423					SNP	C	C	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60937743	NES16191467	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122967320 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	6 bp upstream
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	992 bp proximal
Tssr58744	transcription start site region 58744	53 bp downstream
Tssr58745	transcription start site region 58745	within coordinates