rs49366486 SNP Detail

Summary

• ID
  rs49366486
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30259876 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAAATAT GTAAAAATAC
  TCAATAGGGA ACATCAAAGT GGGGACTGAG ACTTTATCAT TATTTATTTA TTGCCTCACT
  CTGGCTCAGT CTAGCCTGAA GCTCATTATG TATGTGACCC AAGCTGTCTC TGAACTCCCG
  GAAGGCCTCC TGCCTCAGCC TCCCCAGTGT GTGATTAACA CAACAACCTG TTGGGTATAT
  R
  CTTTTCTTAA CTTATTGGGG GGTGGGGCAC ACCTGTAGCA GTCAGATCAC TTACAGGATT
  TGAGGATCAA ACGCAGGTCA TGACTGGCAG CAAGTGTCCC TACCATTGAG TTATCTCACT
  AGACTCTTTG CTGAAATTAT GTTGACACAG GGTATCACTA CAAACCCCAG CTGGCCTGGA
  AGTCACAGAA ATCCACCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148682511	ENSMUSSNP3391956	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49366486					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30259876 () rs orientation: forward

Symbol	Name	Function Class
Lin37	lin-37 DREAM MuvB core complex component	613 bp upstream
Psenen	presenilin enhancer gamma secretase subunit	1414 bp downstream
Rr400243	regulatory region 400243	555 bp downstream
Tssr71791	transcription start site region 71791	1704 bp upstream
Tssr71792	transcription start site region 71792	1666 bp upstream
Tssr71793	transcription start site region 71793	920 bp upstream
Tssr71794	transcription start site region 71794	799 bp upstream
Tssr71795	transcription start site region 71795	609 bp upstream