rs49366510 SNP Detail

Summary

• ID
  rs49366510
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:83716990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCTGGCGC TTGAGCCCCC GGCCAGGCGG GCGGGTACGG
  CCTGTAGGTC CTGGGCTGCT GGTGGGGGAG CAGGGCCCAG AAGCGGGTGC GCCGTGCGGG
  C
  CAGGACTGAT TGTGTAACTC TCAAGACCTG CCCCCGTGGG TGGCTGTGAG CTGGGAGGAG
  GTGGGGAACC CCTTGCTCCC CTCCTTTGGG CCCATTTTT                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136709539	ENSMUSSNP3727099	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss323046426	CHEV_9_83728544	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49366510					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83716990 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22096	CpG island 22096	within coordinates
Gm57060	predicted gene, 57060	339 bp upstream
Rr383689	regulatory region 383689	within coordinates
Tssr86358	transcription start site region 86358	269 bp downstream
Tssr86359	transcription start site region 86359	201 bp downstream
Tssr90761	transcription start site region 90761	371 bp upstream
Ttk	Ttk protein kinase	within coordinates