rs49366801 SNP Detail

Summary

• ID
  rs49366801
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:89300518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTACCCAA ACGCAAATAA
  ACAGAAAAGC CTCACAAAAC CATCTTCTCT AACATATTCA TAGACTAGAA AGCCTTACGA
  AAATTGAATC GTGGCACAGT GATTCACAGC TAACGTTCTA AACACTGAAT TTGAGCAAAA
  GAAAAAACAG AGGTTGTAGG CTGAAGGCAG CCGTGAGTGA AAACAGCATG CCCACATAAC
  Y
  AACTTGAAAT GATTCACAAC AAAGTCAGGC AAAGAAAGTC TGGTTAATAA AGTGTTGTCA
  GAGAGTAAGT GCTAGAGCCA CCACAGTGAA GACTAGAAGA AAGCAGCATG AGAGATGAAT
  AACATCATAG AGAAACTAAG AGGCCTCGAA TACAGAAGGA TAATTCCACC TTAAAGTAGG
  GAAAAAAGAC TCAGAAGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52457858	NES15438593	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49366801					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52457858	NES15438593	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:89300518 () rs orientation: forward

Symbol	Name	Function Class
Nrxn3	neurexin III	within coordinates
Rr387607	regulatory region 387607	251 bp downstream
Rr470501	regulatory region 470501	1606 bp distal